IL_8WIC_006

3D structure

PDB id

8WIC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 50S ribosomal subunit (body 1) of 70S ribosome, E- tRNA and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGAAGUG*CUCAGUAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8WIC_006 not in the Motif Atlas

Geometric match to IL_4V9F_006

Geometric discrepancy: 0.1024

The information below is about IL_4V9F_006

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.10

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

8WIC|1|A|G|187
8WIC|1|A|G|188
8WIC|1|A|A|189
8WIC|1|A|A|190
8WIC|1|A|G|191
8WIC|1|A|U|192
8WIC|1|A|G|193
*
8WIC|1|A|C|200
8WIC|1|A|U|201
8WIC|1|A|C|202
8WIC|1|A|A|203
8WIC|1|A|G|204
8WIC|1|A|U|205
8WIC|1|A|A|206
8WIC|1|A|C|207

Current chains

Chain A

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L28

Chain 8

50S ribosomal protein L35

Chain O

50S ribosomal protein L15