IL_8WIC_020

3D structure

PDB id

8WIC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 50S ribosomal subunit (body 1) of 70S ribosome, E- tRNA and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CCG*CUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8WIC_020 not in the Motif Atlas

Homologous match to IL_7A0S_014

Geometric discrepancy: 0.1236

The information below is about IL_7A0S_014

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

8WIC|1|A|C|787
8WIC|1|A|C|788
8WIC|1|A|G|789
*
8WIC|1|A|C|921
8WIC|1|A|U|922
8WIC|1|A|G|923

Current chains

Chain A

23S rRNA

Nearby chains

Chain G

50S ribosomal protein L4

Chain O

50S ribosomal protein L15