IL_8WIC_042

3D structure

PDB id

8WIC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 50S ribosomal subunit (body 1) of 70S ribosome, E- tRNA and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CUAAGUG*CUCAAG

Length

13 nucleotides

Bulged bases

8WIC|1|A|C|1260, 8WIC|1|A|A|1262

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8WIC_042 not in the Motif Atlas

Homologous match to IL_7RQB_039

Geometric discrepancy: 0.0964

The information below is about IL_7RQB_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57188.3

Basepair signature

cWW-cSH-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

8WIC|1|A|C|1136
8WIC|1|A|U|1137
8WIC|1|A|A|1138
8WIC|1|A|A|1139
8WIC|1|A|G|1140
8WIC|1|A|U|1141
8WIC|1|A|G|1142
*
8WIC|1|A|C|1258
8WIC|1|A|U|1259
8WIC|1|A|C|1260
8WIC|1|A|A|1261
8WIC|1|A|A|1262
8WIC|1|A|G|1263

Current chains

Chain A

23S rRNA

Nearby chains

Chain I

50S ribosomal protein L6

Chain M

50S ribosomal protein L13