IL_8WIC_069

3D structure

PDB id

8WIC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 50S ribosomal subunit (body 1) of 70S ribosome, E- tRNA and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

8WIC|1|A|G|1917

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8WIC_069 not in the Motif Atlas

Geometric match to IL_7RQB_068

Geometric discrepancy: 0.0825

The information below is about IL_7RQB_068

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_65969.2

Basepair signature

cWW-tSH-tSH-tHH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

8WIC|1|A|C|1904
8WIC|1|A|G|1905
8WIC|1|A|U|1906
8WIC|1|A|A|1907
8WIC|1|A|A|1908
8WIC|1|A|C|1909
*
8WIC|1|A|G|1914
8WIC|1|A|G|1915
8WIC|1|A|A|1916
8WIC|1|A|G|1917
8WIC|1|A|A|1918
8WIC|1|A|A|1919
8WIC|1|A|G|1920

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L2