IL_8WIC_071

3D structure

PDB id

8WIC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 50S ribosomal subunit (body 1) of 70S ribosome, E- tRNA and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UGUAAG*CCCAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8WIC_071 not in the Motif Atlas

Geometric match to IL_8ZA4_001

Geometric discrepancy: 0.1992

The information below is about IL_8ZA4_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_76308.6

Basepair signature

cWW-tSH-tHW-tHS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

8WIC|1|A|U|1937
8WIC|1|A|G|1938
8WIC|1|A|U|1939
8WIC|1|A|A|1940
8WIC|1|A|A|1941
8WIC|1|A|G|1942
*
8WIC|1|A|C|1952
8WIC|1|A|C|1953
8WIC|1|A|C|1954
8WIC|1|A|A|1955
8WIC|1|A|A|1956
8WIC|1|A|G|1957

Current chains

Chain A

23S rRNA

Nearby chains