IL_8WIC_082

3D structure

PDB id

8WIC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 50S ribosomal subunit (body 1) of 70S ribosome, E- tRNA and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGAAAUUCCUUG*CCUG

Length

16 nucleotides

Bulged bases

8WIC|1|A|A|2162, 8WIC|1|A|U|2168

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8WIC_082 not in the Motif Atlas

Geometric match to IL_7A0S_072

Geometric discrepancy: 0.1563

The information below is about IL_7A0S_072

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04332.3

Basepair signature

cWW-L-R-L-cWW-L-L-R-L-R-L

Number of instances in this motif group

2

Unit IDs

8WIC|1|A|C|2158
8WIC|1|A|G|2159
8WIC|1|A|A|2160
8WIC|1|A|A|2161
8WIC|1|A|A|2162
8WIC|1|A|U|2163
8WIC|1|A|U|2164
8WIC|1|A|C|2165
8WIC|1|A|C|2166
8WIC|1|A|U|2167
8WIC|1|A|U|2168
8WIC|1|A|G|2169
*
8WIC|1|A|C|2185
8WIC|1|A|C|2186
8WIC|1|A|U|2187
8WIC|1|A|G|2188

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L2