IL_8WIC_094

3D structure

PDB id

8WIC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 50S ribosomal subunit (body 1) of 70S ribosome, E- tRNA and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CUGUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

8WIC|1|A|U|2355

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8WIC_094 not in the Motif Atlas

Homologous match to IL_5J7L_330

Geometric discrepancy: 0.2656

The information below is about IL_5J7L_330

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

8WIC|1|A|C|2352
8WIC|1|A|U|2353
8WIC|1|A|G|2354
8WIC|1|A|U|2355
8WIC|1|A|G|2356
8WIC|1|A|A|2357
8WIC|1|A|A|2358
8WIC|1|A|G|2359
*
8WIC|1|A|U|2378
8WIC|1|A|G|2379
8WIC|1|A|G|2380
8WIC|1|A|A|2381
8WIC|1|A|G|2382

Current chains

Chain A

23S rRNA

Nearby chains