IL_8WIC_105

3D structure

PDB id

8WIC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 50S ribosomal subunit (body 1) of 70S ribosome, E- tRNA and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CCAAG*CGACG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8WIC_105 not in the Motif Atlas

Homologous match to IL_4WF9_093

Geometric discrepancy: 0.1947

The information below is about IL_4WF9_093

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

8WIC|1|A|C|2690
8WIC|1|A|C|2691
8WIC|1|A|A|2692
8WIC|1|A|A|2693
8WIC|1|A|G|2694
*
8WIC|1|A|C|2704
8WIC|1|A|G|2705
8WIC|1|A|A|2706
8WIC|1|A|C|2707
8WIC|1|A|G|2708

Current chains

Chain A

23S rRNA

Nearby chains