IL_8WIC_124
3D structure
- PDB id
- 8WIC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo- EM structure of Mycobacterium smegmatis 50S ribosomal subunit (body 1) of 70S ribosome, E- tRNA and RafH.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- GUCCC*GAACC
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8WIC_124 not in the Motif Atlas
- Homologous match to IL_5TBW_376
- Geometric discrepancy: 0.1534
- The information below is about IL_5TBW_376
- Detailed Annotation
- Symmetric double minor groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_58103.9
- Basepair signature
- cWW-cSH-cWS-tSW-L-R-cWW-R
- Number of instances in this motif group
- 9
Unit IDs
8WIC|1|B|G|35
8WIC|1|B|U|36
8WIC|1|B|C|37
8WIC|1|B|C|38
8WIC|1|B|C|39
*
8WIC|1|B|G|45
8WIC|1|B|A|46
8WIC|1|B|A|47
8WIC|1|B|C|48
8WIC|1|B|C|49
Current chains
- Chain B
- 5S rRNA
Nearby chains
- Chain 4
- 50S ribosomal protein L31
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain H
- 50S ribosomal protein L5
- Chain R
- 50S ribosomal protein L18
Coloring options: