IL_8WIC_131

3D structure

PDB id

8WIC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 50S ribosomal subunit (body 1) of 70S ribosome, E- tRNA and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGAACUCGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8WIC_131 not in the Motif Atlas

Homologous match to IL_4WF9_117

Geometric discrepancy: 0.0748

The information below is about IL_4WF9_117

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22854.4

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

7

Unit IDs

8WIC|1|A|G|1884
8WIC|1|A|G|1885
8WIC|1|A|A|1886
8WIC|1|A|A|1887
8WIC|1|A|C|1888
8WIC|1|A|U|1889
8WIC|1|A|C|1890
8WIC|1|A|G|1891
8WIC|1|A|G|1892
*
8WIC|1|A|C|2214
8WIC|1|A|U|2215
8WIC|1|A|G|2216
8WIC|1|A|U|2217
8WIC|1|A|C|2218

Current chains

Chain A

23S rRNA

Nearby chains

Chain F

50S ribosomal protein L3

Chain N

50S ribosomal protein L14