IL_8WID_019

3D structure

PDB id

8WID (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 30S ribosomal subunit (body 2) of 70S ribosome, E- tRNA and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGAUGACG*UGUAAAC

Length

15 nucleotides

Bulged bases

8WID|1|a|U|412

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8WID_019 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.1479

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

8WID|1|a|G|409
8WID|1|a|G|410
8WID|1|a|A|411
8WID|1|a|U|412
8WID|1|a|G|413
8WID|1|a|A|414
8WID|1|a|C|415
8WID|1|a|G|416
*
8WID|1|a|U|427
8WID|1|a|G|428
8WID|1|a|U|429
8WID|1|a|A|430
8WID|1|a|A|431
8WID|1|a|A|432
8WID|1|a|C|433

Current chains

Chain a

16S rRNA

Nearby chains

Chain e

30S ribosomal protein S4