IL_8WID_019
3D structure
- PDB id
- 8WID (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo- EM structure of Mycobacterium smegmatis 30S ribosomal subunit (body 2) of 70S ribosome, E- tRNA and RafH.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- GGAUGACG*UGUAAAC
- Length
- 15 nucleotides
- Bulged bases
- 8WID|1|a|U|412
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8WID_019 not in the Motif Atlas
- Homologous match to IL_4LFB_017
- Geometric discrepancy: 0.1479
- The information below is about IL_4LFB_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_62329.1
- Basepair signature
- cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW
- Number of instances in this motif group
- 2
Unit IDs
8WID|1|a|G|409
8WID|1|a|G|410
8WID|1|a|A|411
8WID|1|a|U|412
8WID|1|a|G|413
8WID|1|a|A|414
8WID|1|a|C|415
8WID|1|a|G|416
*
8WID|1|a|U|427
8WID|1|a|G|428
8WID|1|a|U|429
8WID|1|a|A|430
8WID|1|a|A|431
8WID|1|a|A|432
8WID|1|a|C|433
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain e
- 30S ribosomal protein S4
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