IL_8WID_029

3D structure

PDB id

8WID (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 30S ribosomal subunit (body 2) of 70S ribosome, E- tRNA and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UGAAAAC*GCGUG

Length

12 nucleotides

Bulged bases

8WID|1|a|U|612

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8WID_029 not in the Motif Atlas

Geometric match to IL_8C3A_433

Geometric discrepancy: 0.293

The information below is about IL_8C3A_433

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_83023.1

Basepair signature

cWW-R-L-R-L-R-L-L-L-L

Number of instances in this motif group

1

Unit IDs

8WID|1|a|U|585
8WID|1|a|G|586
8WID|1|a|A|587
8WID|1|a|A|588
8WID|1|a|A|589
8WID|1|a|A|590
8WID|1|a|C|591
*
8WID|1|a|G|609
8WID|1|a|C|610
8WID|1|a|G|611
8WID|1|a|U|612
8WID|1|a|G|613

Current chains

Chain a

16S rRNA

Nearby chains

Chain i

30S ribosomal protein S8

Chain q

30S ribosomal protein S16