IL_8WID_054
3D structure
- PDB id
- 8WID (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo- EM structure of Mycobacterium smegmatis 30S ribosomal subunit (body 2) of 70S ribosome, E- tRNA and RafH.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CGAUG*UGGAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8WID_054 not in the Motif Atlas
- Homologous match to IL_5J7L_056
- Geometric discrepancy: 0.2578
- The information below is about IL_5J7L_056
- Detailed Annotation
- Double sheared with non-canonical cWW
- Broad Annotation
- Double sheared
- Motif group
- IL_17948.2
- Basepair signature
- cWW-L-R-tSH-tHS-cWW
- Number of instances in this motif group
- 13
Unit IDs
8WID|1|a|C|1240
8WID|1|a|G|1241
8WID|1|a|A|1242
8WID|1|a|U|1243
8WID|1|a|G|1244
*
8WID|1|a|U|1253
8WID|1|a|G|1254
8WID|1|a|G|1255
8WID|1|a|A|1256
8WID|1|a|G|1257
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain o
- 30S ribosomal protein S14A
- Chain t
- 30S ribosomal protein S19
Coloring options: