3D structure

PDB id
8WID (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo- EM structure of Mycobacterium smegmatis 30S ribosomal subunit (body 2) of 70S ribosome, E- tRNA and RafH.
Experimental method
ELECTRON MICROSCOPY
Resolution
3.5 Å

Loop

Sequence
GCC*GUC
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8WID_064 not in the Motif Atlas
Homologous match to IL_4LFB_063
Geometric discrepancy: 0.1143
The information below is about IL_4LFB_063
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
No text annotation
Motif group
IL_87907.2
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
179

Unit IDs

8WID|1|a|G|1418
8WID|1|a|C|1419
8WID|1|a|C|1420
*
8WID|1|a|G|1448
8WID|1|a|U|1449
8WID|1|a|C|1450

Current chains

Chain a
16S rRNA

Nearby chains

Chain u
30S ribosomal protein S20

Coloring options:


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