IL_8WIF_021
3D structure
- PDB id
- 8WIF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo- EM structure of Mycobacterium smegmatis 30S ribosomal subunit (body 2) of 70S ribosome and RafH.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- AGACG*CGGUAU
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8WIF_021 not in the Motif Atlas
- Geometric match to IL_4LFB_018
- Geometric discrepancy: 0.0964
- The information below is about IL_4LFB_018
- Detailed Annotation
- 6x5 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_82100.1
- Basepair signature
- cWW-tWW-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 3
Unit IDs
8WIF|1|a|A|446
8WIF|1|a|G|447
8WIF|1|a|A|448
8WIF|1|a|C|449
8WIF|1|a|G|450
*
8WIF|1|a|C|463
8WIF|1|a|G|464
8WIF|1|a|G|465
8WIF|1|a|U|466
8WIF|1|a|A|467
8WIF|1|a|U|468
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain e
- 30S ribosomal protein S4
- Chain q
- 30S ribosomal protein S16
Coloring options: