IL_8WRC_018

3D structure

PDB id

8WRC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Time-Resolved Ambient Temperature Kineto-Crystallographic Structure of Initiation Factor in Complex with Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.59 Å

Loop

Sequence

GGACG*CGGUAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8WRC_018 not in the Motif Atlas

Homologous match to IL_4LFB_018

Geometric discrepancy: 0.1117

The information below is about IL_4LFB_018

Detailed Annotation

6x5 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_82100.1

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

8WRC|1|A|G|446
8WRC|1|A|G|447
8WRC|1|A|A|448
8WRC|1|A|C|449
8WRC|1|A|G|450
*
8WRC|1|A|C|483
8WRC|1|A|G|484
8WRC|1|A|G|485
8WRC|1|A|U|486
8WRC|1|A|A|487
8WRC|1|A|C|488

Current chains

Chain A

16S rRNA

Nearby chains

Chain D

30S ribosomal protein S4

Chain P

30S ribosomal protein S16