IL_8WRC_052

3D structure

PDB id

8WRC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Time-Resolved Ambient Temperature Kineto-Crystallographic Structure of Initiation Factor in Complex with Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.59 Å

Loop

Sequence

G(4OC)C(5MC)*G(UR3)AAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 4OC, 5MC, UR3

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8WRC_052 not in the Motif Atlas

Homologous match to IL_4LFB_068

Geometric discrepancy: 0.092

The information below is about IL_4LFB_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_25873.1

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

6

Unit IDs

8WRC|1|A|G|1401
8WRC|1|A|4OC|1402
8WRC|1|A|C|1403
8WRC|1|A|5MC|1404
*
8WRC|1|A|G|1497
8WRC|1|A|UR3|1498
8WRC|1|A|A|1499
8WRC|1|A|A|1500
8WRC|1|A|C|1501

Current chains

Chain A

16S rRNA

Nearby chains

Chain L

Small ribosomal subunit protein uS12