IL_8XP2_036

3D structure

PDB id

8XP2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 40S ribosome with LARP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUUAAAA*UC

Length

9 nucleotides

Bulged bases

8XP2|1|S2|A|668

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8XP2_036 not in the Motif Atlas

Homologous match to IL_8C3A_426

Geometric discrepancy: 0.1471

The information below is about IL_8C3A_426

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.4

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

5

Unit IDs

8XP2|1|S2|G|665
8XP2|1|S2|U|666
8XP2|1|S2|U|667
8XP2|1|S2|A|668
8XP2|1|S2|A|669
8XP2|1|S2|A|670
8XP2|1|S2|A|671
*
8XP2|1|S2|U|1161
8XP2|1|S2|C|1162

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SX

40S ribosomal protein S23

Chain Sa

40S ribosomal protein S26