IL_8XP2_051

3D structure

PDB id

8XP2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 40S ribosome with LARP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGAAG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8XP2_051 not in the Motif Atlas

Homologous match to IL_8C3A_442

Geometric discrepancy: 0.0801

The information below is about IL_8C3A_442

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.5

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

16

Unit IDs

8XP2|1|S2|C|1047
8XP2|1|S2|G|1048
8XP2|1|S2|A|1049
8XP2|1|S2|A|1050
8XP2|1|S2|G|1051
*
8XP2|1|S2|C|1067
8XP2|1|S2|G|1068
8XP2|1|S2|U|1069
8XP2|1|S2|A|1070
8XP2|1|S2|G|1071

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SO

40S ribosomal protein S14

Chain Sa

40S ribosomal protein S26