IL_8XP2_056

3D structure

PDB id

8XP2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 40S ribosome with LARP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGAGUAUGG*CUGAAAC

Length

16 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8XP2|1|S2|G|1168
8XP2|1|S2|G|1169
8XP2|1|S2|A|1170
8XP2|1|S2|G|1171
8XP2|1|S2|U|1172
8XP2|1|S2|A|1173
8XP2|1|S2|U|1174
8XP2|1|S2|G|1175
8XP2|1|S2|G|1176
*
8XP2|1|S2|C|1185
8XP2|1|S2|U|1186
8XP2|1|S2|G|1187
8XP2|1|S2|A|1188
8XP2|1|S2|A|1189
8XP2|1|S2|A|1190
8XP2|1|S2|C|1191

Current chains

Chain S2

18S rRNA

Nearby chains

Chain Ln

60S ribosomal protein L41

Chain SX

40S ribosomal protein S23