IL_8XP2_065
3D structure
- PDB id
- 8XP2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human 40S ribosome with LARP1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GACAGGAUUG*CUCGAUUC
- Length
- 18 nucleotides
- Bulged bases
- 8XP2|1|S2|G|1285
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8XP2|1|S2|G|1281
8XP2|1|S2|A|1282
8XP2|1|S2|C|1283
8XP2|1|S2|A|1284
8XP2|1|S2|G|1285
8XP2|1|S2|G|1286
8XP2|1|S2|A|1287
8XP2|1|S2|U|1288
8XP2|1|S2|U|1289
8XP2|1|S2|G|1290
*
8XP2|1|S2|C|1309
8XP2|1|S2|U|1310
8XP2|1|S2|C|1311
8XP2|1|S2|G|1312
8XP2|1|S2|A|1313
8XP2|1|S2|U|1314
8XP2|1|S2|U|1315
8XP2|1|S2|C|1316
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain SK
- 40S ribosomal protein S10
- Chain SM
- 40S ribosomal protein S12
- Chain Sd
- 40S ribosomal protein S29
- Chain Sf
- Ubiquitin-40S ribosomal protein S27a
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