IL_8XP2_077

3D structure

PDB id

8XP2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 40S ribosome with LARP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UA*UCCCCCA

Length

9 nucleotides

Bulged bases

8XP2|1|S2|C|1433, 8XP2|1|S2|C|1434, 8XP2|1|S2|C|1437

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8XP2_077 not in the Motif Atlas

Geometric match to IL_8C3A_400

Geometric discrepancy: 0.1954

The information below is about IL_8C3A_400

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.2

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

8XP2|1|S2|U|1408
8XP2|1|S2|A|1409
*
8XP2|1|S2|U|1432
8XP2|1|S2|C|1433
8XP2|1|S2|C|1434
8XP2|1|S2|C|1435
8XP2|1|S2|C|1436
8XP2|1|S2|C|1437
8XP2|1|S2|A|1438

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SQ

40S ribosomal protein S16

Chain SU

40S ribosomal protein S20