IL_8XP2_095

3D structure

PDB id

8XP2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 40S ribosome with LARP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GCCCCGC*GCGGAGCGC

Length

16 nucleotides

Bulged bases

8XP2|1|S2|C|1753, 8XP2|1|S2|C|1783

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8XP2|1|S2|G|1749
8XP2|1|S2|C|1750
8XP2|1|S2|C|1751
8XP2|1|S2|C|1752
8XP2|1|S2|C|1753
8XP2|1|S2|G|1754
8XP2|1|S2|C|1755
*
8XP2|1|S2|G|1777
8XP2|1|S2|C|1778
8XP2|1|S2|G|1779
8XP2|1|S2|G|1780
8XP2|1|S2|A|1781
8XP2|1|S2|G|1782
8XP2|1|S2|C|1783
8XP2|1|S2|G|1784
8XP2|1|S2|C|1785

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SG

40S ribosomal protein S6