IL_8XP3_003
3D structure
- PDB id
- 8XP3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human 40S ribosome with LARP1 and LRRC47
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- CAAA*UGACG
- Length
- 9 nucleotides
- Bulged bases
- 8XP3|1|S2|A|516
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8XP3_003 not in the Motif Atlas
- Geometric match to IL_4WF9_016
- Geometric discrepancy: 0.3316
- The information below is about IL_4WF9_016
- Detailed Annotation
- Double sheared
- Broad Annotation
- Double sheared
- Motif group
- IL_58355.2
- Basepair signature
- cWW-tSH-tHS-cWW
- Number of instances in this motif group
- 43
Unit IDs
8XP3|1|S2|C|37
8XP3|1|S2|A|38
8XP3|1|S2|A|39
8XP3|1|S2|A|40
*
8XP3|1|S2|U|514
8XP3|1|S2|G|515
8XP3|1|S2|A|516
8XP3|1|S2|C|517
8XP3|1|S2|G|518
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain SE
- 40S ribosomal protein S4, X isoform
- Chain SJ
- 40S ribosomal protein S9
Coloring options: