IL_8XP3_024

3D structure

PDB id

8XP3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 40S ribosome with LARP1 and LRRC47

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CAU*AAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8XP3_024 not in the Motif Atlas

Homologous match to IL_8C3A_414

Geometric discrepancy: 0.0915

The information below is about IL_8C3A_414

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_42997.1

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

18

Unit IDs

8XP3|1|S2|C|459
8XP3|1|S2|A|460
8XP3|1|S2|U|461
*
8XP3|1|S2|A|468
8XP3|1|S2|A|469
8XP3|1|S2|G|470

Current chains

Chain S2

18S rRNA

Nearby chains

Chain JC

Leucine-rich repeat-containing protein 47

Chain SG

40S ribosomal protein S6

Chain SY

40S ribosomal protein S24