IL_8XP3_029
3D structure
- PDB id
- 8XP3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human 40S ribosome with LARP1 and LRRC47
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- ACAG*CCUGU
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8XP3_029 not in the Motif Atlas
- Geometric match to IL_4DB2_001
- Geometric discrepancy: 0.3836
- The information below is about IL_4DB2_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_61988.1
- Basepair signature
- cWW-L-R-L-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
8XP3|1|S2|A|531
8XP3|1|S2|C|532
8XP3|1|S2|A|533
8XP3|1|S2|G|534
*
8XP3|1|S2|C|549
8XP3|1|S2|C|550
8XP3|1|S2|U|551
8XP3|1|S2|G|552
8XP3|1|S2|U|553
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain SJ
- 40S ribosomal protein S9
- Chain Se
- 40S ribosomal protein S30
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