3D structure

PDB id
8XSX (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the human 80S ribosome with Tigecycline, E-tRNA, SERBP1 and eEF2
Experimental method
ELECTRON MICROSCOPY
Resolution
2.4 Å

Loop

Sequence
GCUCC*GCCC
Length
9 nucleotides
Bulged bases
8XSX|1|L5|U|171, 8XSX|1|L5|C|172
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8XSX|1|L5|G|169
8XSX|1|L5|C|170
8XSX|1|L5|U|171
8XSX|1|L5|C|172
8XSX|1|L5|C|173
*
8XSX|1|L5|G|263
8XSX|1|L5|C|264
8XSX|1|L5|C|265
8XSX|1|L5|C|266

Current chains

Chain L5
28S rRNA

Nearby chains

Chain LL
60S ribosomal protein L13
Chain Lh
60S ribosomal protein L35

Coloring options:

Copyright 2025 BGSU RNA group. Page generated in 0.586 s