IL_8XSX_025

3D structure

PDB id

8XSX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with Tigecycline, E-tRNA, SERBP1 and eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GUGU*GACC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8XSX_025 not in the Motif Atlas

Geometric match to IL_4WF9_109

Geometric discrepancy: 0.191

The information below is about IL_4WF9_109

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_30621.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

66

Unit IDs

8XSX|1|L5|G|491
8XSX|1|L5|U|492
8XSX|1|L5|G|493
8XSX|1|L5|U|494
*
8XSX|1|L5|G|659
8XSX|1|L5|A|660
8XSX|1|L5|C|661
8XSX|1|L5|C|662

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4