IL_8XSX_027

3D structure

PDB id

8XSX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with Tigecycline, E-tRNA, SERBP1 and eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GGCGGCCCGG*UCCCCC

Length

16 nucleotides

Bulged bases

8XSX|1|L5|C|501, 8XSX|1|L5|C|502, 8XSX|1|L5|C|503

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8XSX|1|L5|G|496
8XSX|1|L5|G|497
8XSX|1|L5|C|498
8XSX|1|L5|G|499
8XSX|1|L5|G|500
8XSX|1|L5|C|501
8XSX|1|L5|C|502
8XSX|1|L5|C|503
8XSX|1|L5|G|504
8XSX|1|L5|G|505
*
8XSX|1|L5|U|653
8XSX|1|L5|C|654
8XSX|1|L5|C|655
8XSX|1|L5|C|656
8XSX|1|L5|C|657
8XSX|1|L5|C|658

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LQ

60S ribosomal protein L18