IL_8XSX_032

3D structure

PDB id

8XSX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with Tigecycline, E-tRNA, SERBP1 and eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

AC*GAAU

Length

6 nucleotides

Bulged bases

8XSX|1|L5|A|943

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8XSX_032 not in the Motif Atlas

Geometric match to IL_1R3E_001

Geometric discrepancy: 0.2434

The information below is about IL_1R3E_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_84476.1

Basepair signature

cWW-cWW

Number of instances in this motif group

13

Unit IDs

8XSX|1|L5|A|723
8XSX|1|L5|C|724
*
8XSX|1|L5|G|942
8XSX|1|L5|A|943
8XSX|1|L5|A|944
8XSX|1|L5|U|945

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LF

60S ribosomal protein L7