IL_8XSX_087
3D structure
- PDB id
- 8XSX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human 80S ribosome with Tigecycline, E-tRNA, SERBP1 and eEF2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- GUGGC*GAAUC
- Length
- 10 nucleotides
- Bulged bases
- 8XSX|1|L5|G|1975
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8XSX_087 not in the Motif Atlas
- Homologous match to IL_8C3A_058
- Geometric discrepancy: 0.3378
- The information below is about IL_8C3A_058
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_30542.5
- Basepair signature
- cWW-L-R-L-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
8XSX|1|L5|G|1973
8XSX|1|L5|U|1974
8XSX|1|L5|G|1975
8XSX|1|L5|G|1976
8XSX|1|L5|C|1977
*
8XSX|1|L5|G|1989
8XSX|1|L5|A|1990
8XSX|1|L5|A|1991
8XSX|1|L5|U|1992
8XSX|1|L5|C|1993
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain LI
- 60S ribosomal protein L10-like
- Chain LK
- 60S ribosomal protein L12
- Chain Ls
- Large ribosomal subunit protein uL10
Coloring options: