IL_8XSX_104

3D structure

PDB id

8XSX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with Tigecycline, E-tRNA, SERBP1 and eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CC*GUG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8XSX_104 not in the Motif Atlas

Geometric match to IL_5TBW_070

Geometric discrepancy: 0.1355

The information below is about IL_5TBW_070

Detailed Annotation

Single stack bend

Broad Annotation

Single stack bend

Motif group

IL_05035.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

38

Unit IDs

8XSX|1|L5|C|2614
8XSX|1|L5|C|2615
*
8XSX|1|L5|G|2722
8XSX|1|L5|U|2723
8XSX|1|L5|G|2724

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LR

60S ribosomal protein L19

Chain Lg

60S ribosomal protein L34