IL_8XSX_129
3D structure
- PDB id
- 8XSX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human 80S ribosome with Tigecycline, E-tRNA, SERBP1 and eEF2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- UAG*UGGG
- Length
- 7 nucleotides
- Bulged bases
- 8XSX|1|L5|G|4183
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8XSX_129 not in the Motif Atlas
- Homologous match to IL_8C3A_100
- Geometric discrepancy: 0.0977
- The information below is about IL_8C3A_100
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_38958.10
- Basepair signature
- cWW-cWW-cWW-tHS
- Number of instances in this motif group
- 9
Unit IDs
8XSX|1|L5|U|3927
8XSX|1|L5|A|3928
8XSX|1|L5|G|3929
*
8XSX|1|L5|U|4181
8XSX|1|L5|G|4182
8XSX|1|L5|G|4183
8XSX|1|L5|G|4184
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain CC
- Transfer RNA; tRNA
- Chain LA
- 60S ribosomal protein L8
- Chain LN
- 60S ribosomal protein L15
- Chain Lo
- 60S ribosomal protein L36a
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