IL_8XSX_171

3D structure

PDB id

8XSX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with Tigecycline, E-tRNA, SERBP1 and eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CG*UCG

Length

5 nucleotides

Bulged bases

8XSX|1|L5|C|5054

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8XSX_171 not in the Motif Atlas

Geometric match to IL_1KUQ_002

Geometric discrepancy: 0.3686

The information below is about IL_1KUQ_002

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_61258.15

Basepair signature

cWW-L-cWW

Number of instances in this motif group

41

Unit IDs

8XSX|1|L5|C|4996
8XSX|1|L5|G|4997
*
8XSX|1|L5|U|5053
8XSX|1|L5|C|5054
8XSX|1|L5|G|5055

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain Ld

60S ribosomal protein L31