IL_8XSX_196

3D structure

PDB id

8XSX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with Tigecycline, E-tRNA, SERBP1 and eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GCCACUU*AUGCCGAC*AUGCCGAC

Length

23 nucleotides

Bulged bases

8XSX|1|S2|C|139, 8XSX|1|S2|C|142

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8XSX|1|S2|G|130
8XSX|1|S2|C|139
8XSX|1|S2|C|140
8XSX|1|S2|A|141
8XSX|1|S2|C|142
8XSX|1|S2|U|143
8XSX|1|S2|U|144
*
8XSX|1|S2|A|175
8XSX|1|S2|U|176
8XSX|1|S2|G|177
8XSX|1|S2|C|178
8XSX|1|S2|C|179
8XSX|1|S2|G|180
8XSX|1|S2|A|181
8XSX|1|S2|C|182
*
8XSX|1|S2|A|175
8XSX|1|S2|U|176
8XSX|1|S2|G|177
8XSX|1|S2|C|178
8XSX|1|S2|C|179
8XSX|1|S2|G|180
8XSX|1|S2|A|181
8XSX|1|S2|C|182

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SG

40S ribosomal protein S6