IL_8XSX_209

3D structure

PDB id

8XSX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with Tigecycline, E-tRNA, SERBP1 and eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

UCC*GA

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8XSX_209 not in the Motif Atlas

Geometric match to IL_7A0S_054

Geometric discrepancy: 0.2225

The information below is about IL_7A0S_054

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_15011.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

48

Unit IDs

8XSX|1|S2|U|461
8XSX|1|S2|C|462
8XSX|1|S2|C|463
*
8XSX|1|S2|G|467
8XSX|1|S2|A|468

Current chains

Chain S2

18S rRNA

Nearby chains

Chain CB

Elongation factor 2

Chain LV

60S ribosomal protein L23

Chain SG

40S ribosomal protein S6