IL_8XSX_286

3D structure

PDB id

8XSX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with Tigecycline, E-tRNA, SERBP1 and eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GAAUGUCAAAGU*AAUGAAGCGC

Length

22 nucleotides

Bulged bases

8XSX|1|L5|U|3713

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8XSX|1|L5|G|3710
8XSX|1|L5|A|3711
8XSX|1|L5|A|3712
8XSX|1|L5|U|3713
8XSX|1|L5|G|3714
8XSX|1|L5|U|3715
8XSX|1|L5|C|3716
8XSX|1|L5|A|3717
8XSX|1|L5|A|3718
8XSX|1|L5|A|3719
8XSX|1|L5|G|3720
8XSX|1|L5|U|3721
*
8XSX|1|L5|A|3732
8XSX|1|L5|A|3733
8XSX|1|L5|U|3734
8XSX|1|L5|G|3735
8XSX|1|L5|A|3736
8XSX|1|L5|A|3737
8XSX|1|L5|G|3738
8XSX|1|L5|C|3739
8XSX|1|L5|G|3740
8XSX|1|L5|C|3741

Current chains

Chain L5

28S rRNA

Nearby chains

Chain CC

Transfer RNA; tRNA

Chain LA

60S ribosomal protein L8

Chain Li

60S ribosomal protein L36

Chain S2

Small subunit ribosomal RNA; SSU rRNA