IL_8XSX_287

3D structure

PDB id

8XSX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with Tigecycline, E-tRNA, SERBP1 and eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CAUUG*CCAAGCG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8XSX|1|L5|C|4466
8XSX|1|L5|A|4467
8XSX|1|L5|U|4468
8XSX|1|L5|U|4469
8XSX|1|L5|G|4470
*
8XSX|1|L5|C|4485
8XSX|1|L5|C|4486
8XSX|1|L5|A|4487
8XSX|1|L5|A|4488
8XSX|1|L5|G|4489
8XSX|1|L5|C|4490
8XSX|1|L5|G|4491

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LH

60S ribosomal protein L9

Chain LO

60S ribosomal protein L13a

Chain LV

60S ribosomal protein L23

Chain Lm

Ubiquitin-60S ribosomal protein L40