IL_8XSY_023

3D structure

PDB id

8XSY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with Tigecycline, e-tRNA and CCDC124 (40S head Swivelled)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGUC*GC

Length

6 nucleotides

Bulged bases

8XSY|1|L5|G|483, 8XSY|1|L5|U|484

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8XSY_023 not in the Motif Atlas

Geometric match to IL_1R3E_002

Geometric discrepancy: 0.1807

The information below is about IL_1R3E_002

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_05670.1

Basepair signature

cWW-cWW

Number of instances in this motif group

9

Unit IDs

8XSY|1|L5|G|482
8XSY|1|L5|G|483
8XSY|1|L5|U|484
8XSY|1|L5|C|485
*
8XSY|1|L5|G|671
8XSY|1|L5|C|672

Current chains

Chain L5

28S rRNA

Nearby chains