IL_8XSY_052

3D structure

PDB id

8XSY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with Tigecycline, e-tRNA and CCDC124 (40S head Swivelled)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGAG*CGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8XSY_052 not in the Motif Atlas

Geometric match to IL_3D0U_002

Geometric discrepancy: 0.1253

The information below is about IL_3D0U_002

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.2

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

43

Unit IDs

8XSY|1|L5|C|1431
8XSY|1|L5|G|1432
8XSY|1|L5|A|1433
8XSY|1|L5|G|1434
*
8XSY|1|L5|C|1450
8XSY|1|L5|G|1451
8XSY|1|L5|A|1452
8XSY|1|L5|G|1453

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LQ

60S ribosomal protein L18