IL_8XSY_115

3D structure

PDB id

8XSY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with Tigecycline, e-tRNA and CCDC124 (40S head Swivelled)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGGUC*GGCGCCUAGC

Length

15 nucleotides

Bulged bases

8XSY|1|L5|A|3596

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8XSY|1|L5|G|2901
8XSY|1|L5|G|2902
8XSY|1|L5|G|2903
8XSY|1|L5|U|2904
8XSY|1|L5|C|2905
*
8XSY|1|L5|G|3589
8XSY|1|L5|G|3590
8XSY|1|L5|C|3591
8XSY|1|L5|G|3592
8XSY|1|L5|C|3593
8XSY|1|L5|C|3594
8XSY|1|L5|U|3595
8XSY|1|L5|A|3596
8XSY|1|L5|G|3597
8XSY|1|L5|C|3598

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LR

60S ribosomal protein L19

Chain SI

40S ribosomal protein S8

Chain SL

40S ribosomal protein S11