IL_8XSY_140

3D structure

PDB id

8XSY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with Tigecycline, e-tRNA and CCDC124 (40S head Swivelled)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CCAAG*CGACG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8XSY_140 not in the Motif Atlas

Homologous match to IL_8C3A_114

Geometric discrepancy: 0.1432

The information below is about IL_8C3A_114

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65585.1

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

8XSY|1|L5|C|4412
8XSY|1|L5|C|4413
8XSY|1|L5|A|4414
8XSY|1|L5|A|4415
8XSY|1|L5|G|4416
*
8XSY|1|L5|C|4426
8XSY|1|L5|G|4427
8XSY|1|L5|A|4428
8XSY|1|L5|C|4429
8XSY|1|L5|G|4430

Current chains

Chain L5

28S rRNA

Nearby chains

Chain CE

Coiled-coil domain-containing protein 124

Chain LI

Large ribosomal subunit protein uL16

Chain Lm

Ubiquitin-60S ribosomal protein L40