IL_8XSY_160

3D structure

PDB id

8XSY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with Tigecycline, e-tRNA and CCDC124 (40S head Swivelled)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CCUCGGAUAG*UGCGGAGUG

Length

19 nucleotides

Bulged bases

8XSY|1|L5|C|4757, 8XSY|1|L5|U|4758, 8XSY|1|L5|A|4764, 8XSY|1|L5|G|4870, 8XSY|1|L5|G|4873, 8XSY|1|L5|U|4876

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8XSY|1|L5|C|4756
8XSY|1|L5|C|4757
8XSY|1|L5|U|4758
8XSY|1|L5|C|4759
8XSY|1|L5|G|4760
8XSY|1|L5|G|4761
8XSY|1|L5|A|4762
8XSY|1|L5|U|4763
8XSY|1|L5|A|4764
8XSY|1|L5|G|4765
*
8XSY|1|L5|U|4869
8XSY|1|L5|G|4870
8XSY|1|L5|C|4871
8XSY|1|L5|G|4872
8XSY|1|L5|G|4873
8XSY|1|L5|A|4874
8XSY|1|L5|G|4875
8XSY|1|L5|U|4876
8XSY|1|L5|G|4877

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LE

60S ribosomal protein L6

Chain LH

60S ribosomal protein L9

Chain LM

60S ribosomal protein L14

Chain LO

60S ribosomal protein L13a

Chain LS

60S ribosomal protein L18a