IL_8XSY_213

3D structure

PDB id

8XSY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with Tigecycline, e-tRNA and CCDC124 (40S head Swivelled)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUC*GC

Length

5 nucleotides

Bulged bases

8XSY|1|S2|U|607

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8XSY_213 not in the Motif Atlas

Geometric match to IL_4V88_407

Geometric discrepancy: 0.1966

The information below is about IL_4V88_407

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

8XSY|1|S2|G|606
8XSY|1|S2|U|607
8XSY|1|S2|C|608
*
8XSY|1|S2|G|635
8XSY|1|S2|C|636

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SD

40S ribosomal protein S3

Chain SJ

40S ribosomal protein S9

Chain Se

40S ribosomal protein S30