IL_8XSY_216

3D structure

PDB id

8XSY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with Tigecycline, e-tRNA and CCDC124 (40S head Swivelled)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUUAAAA*UC

Length

9 nucleotides

Bulged bases

8XSY|1|S2|A|668

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8XSY_216 not in the Motif Atlas

Homologous match to IL_8C3A_426

Geometric discrepancy: 0.1247

The information below is about IL_8C3A_426

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.4

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

5

Unit IDs

8XSY|1|S2|G|665
8XSY|1|S2|U|666
8XSY|1|S2|U|667
8XSY|1|S2|A|668
8XSY|1|S2|A|669
8XSY|1|S2|A|670
8XSY|1|S2|A|671
*
8XSY|1|S2|U|1161
8XSY|1|S2|C|1162

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SX

40S ribosomal protein S23

Chain Sa

40S ribosomal protein S26