IL_8XSY_226

3D structure

PDB id

8XSY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with Tigecycline, e-tRNA and CCDC124 (40S head Swivelled)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAC*GUUU

Length

7 nucleotides

Bulged bases

8XSY|1|S2|U|1016

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8XSY_226 not in the Motif Atlas

Geometric match to IL_3R1C_018

Geometric discrepancy: 0.2405

The information below is about IL_3R1C_018

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.2

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

58

Unit IDs

8XSY|1|S2|G|925
8XSY|1|S2|A|926
8XSY|1|S2|C|927
*
8XSY|1|S2|G|1014
8XSY|1|S2|U|1015
8XSY|1|S2|U|1016
8XSY|1|S2|U|1017

Current chains

Chain S2

18S rRNA

Nearby chains

Chain Lc

60S ribosomal protein L30

Chain SN

40S ribosomal protein S13

Chain Sb

40S ribosomal protein S27