IL_8XSY_255

3D structure

PDB id

8XSY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with Tigecycline, e-tRNA and CCDC124 (40S head Swivelled)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UA*UCCCCCA

Length

9 nucleotides

Bulged bases

8XSY|1|S2|C|1433, 8XSY|1|S2|C|1434

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8XSY_255 not in the Motif Atlas

Geometric match to IL_1R3E_002

Geometric discrepancy: 0.1832

The information below is about IL_1R3E_002

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_05670.1

Basepair signature

cWW-cWW

Number of instances in this motif group

9

Unit IDs

8XSY|1|S2|U|1408
8XSY|1|S2|A|1409
*
8XSY|1|S2|U|1432
8XSY|1|S2|C|1433
8XSY|1|S2|C|1434
8XSY|1|S2|C|1435
8XSY|1|S2|C|1436
8XSY|1|S2|C|1437
8XSY|1|S2|A|1438

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SQ

40S ribosomal protein S16

Chain SU

40S ribosomal protein S20