IL_8XSY_278

3D structure

PDB id

8XSY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with Tigecycline, e-tRNA and CCDC124 (40S head Swivelled)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGAAGUCGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8XSY_278 not in the Motif Atlas

Homologous match to IL_8C3A_484

Geometric discrepancy: 0.0543

The information below is about IL_8C3A_484

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04332.2

Basepair signature

cWW-cWW-L-cWW-L-R-L-R-L-L

Number of instances in this motif group

3

Unit IDs

8XSY|1|L5|G|2847
8XSY|1|L5|G|2848
8XSY|1|L5|A|2849
8XSY|1|L5|A|2850
8XSY|1|L5|G|2851
8XSY|1|L5|U|2852
8XSY|1|L5|C|2853
8XSY|1|L5|G|2854
8XSY|1|L5|G|2855
*
8XSY|1|L5|C|3837
8XSY|1|L5|U|3838
8XSY|1|L5|G|3839
8XSY|1|L5|U|3840
8XSY|1|L5|C|3841

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LV

60S ribosomal protein L23