IL_8XSY_279

3D structure

PDB id

8XSY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with Tigecycline, e-tRNA and CCDC124 (40S head Swivelled)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUGAAUGUCAAAGU*AAUGAAGCGCG

Length

25 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8XSY|1|L5|C|3708
8XSY|1|L5|U|3709
8XSY|1|L5|G|3710
8XSY|1|L5|A|3711
8XSY|1|L5|A|3712
8XSY|1|L5|U|3713
8XSY|1|L5|G|3714
8XSY|1|L5|U|3715
8XSY|1|L5|C|3716
8XSY|1|L5|A|3717
8XSY|1|L5|A|3718
8XSY|1|L5|A|3719
8XSY|1|L5|G|3720
8XSY|1|L5|U|3721
*
8XSY|1|L5|A|3732
8XSY|1|L5|A|3733
8XSY|1|L5|U|3734
8XSY|1|L5|G|3735
8XSY|1|L5|A|3736
8XSY|1|L5|A|3737
8XSY|1|L5|G|3738
8XSY|1|L5|C|3739
8XSY|1|L5|G|3740
8XSY|1|L5|C|3741
8XSY|1|L5|G|3742

Current chains

Chain L5

28S rRNA

Nearby chains

Chain CC

Transfer RNA; tRNA

Chain LA

60S ribosomal protein L8

Chain Li

60S ribosomal protein L36

Chain S2

Small subunit ribosomal RNA; SSU rRNA