IL_8XSZ_024

3D structure

PDB id

8XSZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with Tigecycline, E-tRNA and P-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGUC*GC

Length

6 nucleotides

Bulged bases

8XSZ|1|L5|G|483, 8XSZ|1|L5|U|484

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8XSZ_024 not in the Motif Atlas

Geometric match to IL_4LFB_007

Geometric discrepancy: 0.2187

The information below is about IL_4LFB_007

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_75289.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

4

Unit IDs

8XSZ|1|L5|G|482
8XSZ|1|L5|G|483
8XSZ|1|L5|U|484
8XSZ|1|L5|C|485
*
8XSZ|1|L5|G|671
8XSZ|1|L5|C|672

Current chains

Chain L5

28S rRNA

Nearby chains